publications

2024

  1. Flashzoi: An enhanced Borzoi model for accelerated genomic analysis
    Johannes C Hingerl, Alexander Karollus, and Julien Gagneur
    bioRxiv, 2024
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  2. scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution
    Johannes C Hingerl*, Laura D Martens*, Alexander Karollus, Trevor Manz, and 3 more authors
    bioRxiv, 2024
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  3. Nucleotide dependency analysis of DNA language models reveals genomic functional elements
    Pedro Silva*, Alexander Karollus*, Johannes Hingerl, Gihanna Galindez, and 4 more authors
    bioRxiv, 2024
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  4. Species-aware DNA language models capture regulatory elements and their evolution
    Alexander Karollus*, Johannes Hingerl*, Dennis Gankin*, Martin Grosshauser, and 2 more authors
    Genome Biology, 2024
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  5. Deep learning-driven fragment ion series classification enables highly precise and sensitive de novo peptide sequencing
    Daniela Klaproth-Andrade, Johannes Hingerl, Yanik Bruns, Nicholas H Smith, and 3 more authors
    Nature Communications, 2024
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2021

  1. Explainable abusive language classification leveraging user and network data
    Maximilian Wich, Edoardo Mosca, Adrian Gorniak, Johannes Hingerl, and 1 more author
    In Joint European Conference on Machine Learning and Knowledge Discovery in Databases, 2021
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  2. Device and method for determining at least one part of a knowledge graph [Patent]
    Annemarie Friedrich, Heike Adel-Vu, and Johannes Christoph Hingerl
    2021

2020

  1. The SOFC-exp corpus and neural approaches to information extraction in the materials science domain
    Annemarie Friedrich*, Heike Adel*, Federico Tomazic, Johannes Hingerl, and 3 more authors
    In Proceedings of the 58th Annual Meeting of the Association for Computational Linguistics, 2020
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