Johannes Hingerl

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PhD student

Computational Molecular Medicine

Technical University of Munich

I am a second year PhD student in computational biology under supervision of Julien Gagneur at the Technical University of Munich (TUM), working on decoding the regulatory grammar encoded in genomic sequences using deep learning.

Before that, I studied computer science at TUM, and worked for one year at Robert Bosch GmbH, interning at the Bosch Center for AI.

latest posts

Dec 03, 2024 Optimizing Relative Positional Encodings in Enformer and Borzoi

selected publications

  1. scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution
    Johannes C Hingerl*, Laura D Martens*, Alexander Karollus, Trevor Manz, and 3 more authors
    bioRxiv, 2024
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  2. Species-aware DNA language models capture regulatory elements and their evolution
    Alexander Karollus*, Johannes Hingerl*, Dennis Gankin*, Martin Grosshauser, and 2 more authors
    Genome Biology, 2024
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  3. The SOFC-exp corpus and neural approaches to information extraction in the materials science domain
    Annemarie Friedrich*, Heike Adel*, Federico Tomazic, Johannes Hingerl, and 3 more authors
    In Proceedings of the 58th Annual Meeting of the Association for Computational Linguistics, 2020
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